aind_ccf_reg package

Submodules

aind_ccf_reg.convertfile module

Converts a file - test file

aind_ccf_reg.register module

CCF registration of an image to the Allen Institute’s atlas

class aind_ccf_reg.register.RegSchema(*, only: Sequence[str] | Set[str] | None = None, exclude: Sequence[str] | Set[str] = (), many: bool = False, context: dict | None = None, load_only: Sequence[str] | Set[str] = (), dump_only: Sequence[str] | Set[str] = (), partial: bool | Sequence[str] | Set[str] = False, unknown: str | None = None)

Bases: ArgSchema

Schema format for Registration.

opts: SchemaOpts = <marshmallow.schema.SchemaOpts object>

class aind_ccf_reg.register.Register(input_data=None, schema_type=None, output_schema_type=None, args=None, logger_name='argschema.argschema_parser')

Bases: ArgSchemaParser

Class to Register lightsheet data to CCF atlas

default_schema

alias of RegSchema

run() → str

Runs CCF registration

aind_ccf_reg.register.main()

Main function to execute

aind_ccf_reg.register_only module

Registers only - test file

Module contents

CCF Registration package.